Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106602323Probable E3 ubiquitin-protein ligase HERC3 isoform X1. (980 aa)    
Predicted Functional Partners:
ENSSSAP00000001109
annotation not available
    
  0.775
LOC106610261
Probable E3 ubiquitin-protein ligase HERC3.
    
  0.775
LOC106610289
Probable E3 ubiquitin-protein ligase HERC3 isoform X2.
    
  0.775
LOC106602650
Probable E3 ubiquitin-protein ligase HERC3 isoform X1.
    
  0.775
ENSSSAP00000025737
annotation not available
    
 0.709
LOC106582182
E3 SUMO-protein ligase RanBP2-like isoform X4.
    
 0.709
LOC106586530
E3 SUMO-protein ligase RanBP2-like isoform X1.
    
 0.709
ENSSSAP00000077141
annotation not available
    
 0.709
ENSSSAP00000077162
annotation not available
    
 0.709
ENSSSAP00000077168
annotation not available
    
 0.709
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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