STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106601774TBC1 domain family member 16-like. (713 aa)    
Predicted Functional Partners:
LOC106610715
Ras-related protein Rab-4A-like.
    
 0.721
LOC106567818
Ras-related protein Rab-4B-like.
    
 0.721
LOC106603343
Ras-related protein Rab-4B-like.
    
 0.721
LOC106612374
Ras-related protein Rab-4B.
    
 0.721
ENSSSAP00000094240
RAB4a, member RAS oncogene family.
    
 0.721
LOC106588413
Diacylglycerol kinase.
      
 0.586
ENSSSAP00000057639
Diacylglycerol kinase, epsilon.
      
 0.586
LOC106588435
Caspase recruitment domain-containing protein 14-like.
      
 0.521
LOC106564890
Caspase recruitment domain-containing protein 14-like.
      
 0.521
LOC106611618
Polycomb group RING finger protein 1-like isoform X2.
      
 0.511
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.