STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106560445Breast cancer metastasis-suppressor 1 homolog isoform X2. (257 aa)    
Predicted Functional Partners:
LOC106590004
AT-rich interactive domain-containing protein 4B-like.
   
 0.944
LOC106578775
AT-rich interactive domain-containing protein 4B-like isoform X1.
   
 0.944
arid4a
AT-rich interactive domain-containing protein 4A.
   
 0.944
LOC106611238
AT-rich interactive domain-containing protein 4A-like isoform X4.
   
 0.944
ENSSSAP00000103251
AT-rich interactive domain-containing protein 4B-like.
   
 0.944
SAP30L
Histone deacetylase complex subunit SAP30L.
   
 0.918
sp30l
Histone deacetylase complex subunit SAP30L.
   
 0.918
hdac1
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.786
LOC106570688
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.786
hdac2
Histone deacetylase; Belongs to the histone deacetylase family. HD Type 1 subfamily.
    
 0.786
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (14%) [HD]