Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
shisa2Protein shisa-2 homolog isoform X1. (275 aa)    
Predicted Functional Partners:
alkbh4
Alkylated DNA repair protein alkB homolog 4.
      
 0.542
aifm1
Apoptosis-inducing factor 1, mitochondrial isoform X1.
      
 0.540
LOC106590449
Transcription factor IIIA-like.
      
 0.482
LOC106579509
wiskott-Aldrich syndrome protein family member 3-like.
      
 0.435
LOC106590445
wiskott-Aldrich syndrome protein family member 3-like.
      
 0.435
LOC106563600
Transcription factor IIIA-like isoform X1.
      
 0.434
ino80e
INO80 complex subunit E isoform X1.
      
 0.434
ZADH2
Zinc binding alcohol dehydrogenase domain containing 2.
      
 0.434
ENSSSAP00000085107
annotation not available
      
 0.434
zadh2
Zinc-binding alcohol dehydrogenase domain-containing protein 2.
      
 0.434
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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