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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nipal3NIPA-like protein 3. (391 aa)    
Predicted Functional Partners:
ccdc90b
Coiled-coil domain-containing protein 90B, mitochondrial.
      
 0.598
fam131c
Protein FAM131C isoform X2.
      
 0.598
txndc16
Thioredoxin domain-containing protein 16.
      
 0.597
zbtb40
Zinc finger and BTB domain-containing protein 40.
      
 0.596
ENSSSAP00000053305
Mitochondrial ribosomal protein L53.
      
 0.594
khk
Ketohexokinase isoform X1.
      
 0.592
nme6
Nucleoside diphosphate kinase.
      
 0.585
trdmt1
tRNA (Cytosine(38)-C(5))-methyltransferase isoform X1; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
      
 0.489
FBX4
F-box only protein 4.
      
 0.432
LOC106612143
Syntaxin-binding protein 4-like isoform X2.
      
 0.424
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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