Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC106589946Nuclear factor 1; Recognizes and binds the palindromic sequence 5'- TTGGCNNNNNGCCAA-3' present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication. (603 aa)    
Predicted Functional Partners:
LOC106582882
GATA-binding factor 2-like isoform X2.
    
 
 0.745
LOC106565550
GATA-binding factor 2-like isoform X1.
    
 
 0.741
LOC106565821
GATA-binding factor 2-like isoform X1.
    
 
 0.741
LOC106582928
GATA-binding factor 2-like isoform X2.
    
 
 0.741
sp1
Transcription factor Sp1 isoform X2.
    
 
 0.595
tbp
TATA-box-binding protein isoform X1.
    
 
 0.516
LOC106574072
Syntaxin-6-like isoform X1; Belongs to the syntaxin family.
      
 0.486
LOC106603817
Voltage-dependent anion-selective channel protein 1.
      
 0.431
ENSSSAP00000037910
Syntaxin 6.
      
 0.422
LOC106574044
TM2 domain-containing protein 1-like.
      
 0.418
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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