Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC10660370840S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (250 aa)    
Predicted Functional Partners:
rs15
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
 0.998
rs30
40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.
   
 0.997
rs16
40S ribosomal protein S16 isoform X1; Belongs to the universal ribosomal protein uS9 family.
  
 0.997
rps9
40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family.
  
 0.996
rs19
40S ribosomal protein S19.
   
 0.996
RPS16
40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family.
  
 0.996
RS29
40S ribosomal protein S29.
  
 0.995
RPS29
40S ribosomal protein S29.
  
 0.995
LOC106568958
40S ribosomal protein S28.
   
 0.995
LOC106601127
40S ribosomal protein S11; Belongs to the universal ribosomal protein uS17 family.
  
 0.994
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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