STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100194627Transcription factor BTF3; Belongs to the NAC-beta family. (188 aa)    
Predicted Functional Partners:
LOC106572697
Nascent polypeptide-associated complex subunit alpha-like isoform X1.
   
 0.991
LOC106571941
Nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X1.
   
 0.991
NACA
Nascent polypeptide-associated complex subunit alpha, muscle-specific form isoform X1.
   
 0.991
ENSSSAP00000006004
annotation not available
   
 0.981
ENSSSAP00000118118
annotation not available
   
 0.981
rpl18
60S ribosomal protein L18.
   
 
 0.976
LOC106605423
NAC-alpha domain-containing protein 1-like.
   
 0.973
ENSSSAP00000034287
Nascent polypeptide-associated complex subunit alpha, muscle-specific form-like.
   
 0.973
LOC106602804
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 
 0.971
LOC106609995
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
   
 
 0.971
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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