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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100194627Transcription factor BTF3; Belongs to the NAC-beta family. (188 aa)    
Predicted Functional Partners:
rpl18
60S ribosomal protein L18.
   
 
 0.980
RL35A
60S ribosomal protein L35a.
   
   0.966
LOC106583787
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
   0.963
LOC106566230
60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.
   
   0.963
LOC106572697
Nascent polypeptide-associated complex subunit alpha-like isoform X1.
   
 
 0.962
LOC106571941
Nascent polypeptide-associated complex subunit alpha, muscle-specific form-like isoform X1.
   
 
 0.962
NACA
Nascent polypeptide-associated complex subunit alpha, muscle-specific form isoform X1.
   
 
 0.962
RL6
60S ribosomal protein L6.
   
 
 0.954
rpl6
60S ribosomal protein L6 isoform X1.
   
 
 0.954
RL23A
60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.
   
 
 0.944
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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