Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CCDC134Coiled-coil domain-containing protein 134-like isoform X2. (227 aa)    
Predicted Functional Partners:
cbr1
Carbonyl reductase [NADPH] 1; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
      
 0.777
RL35A
60S ribosomal protein L35a.
   
   0.731
rpl18
60S ribosomal protein L18.
    
   0.728
LOC106571077
Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4.
    
   0.728
rpl12
60S ribosomal protein L12 isoform X1; Belongs to the universal ribosomal protein uL11 family.
    
   0.728
LOC106583574
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
    
 
 0.700
LOC106565377
60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.
    
 
 0.700
RPL9
60S ribosomal protein L9.
    
  0.697
ENSSSAP00000065403
Ribosomal protein L9.
    
  0.697
LOC106565535
Peptidylprolyl isomerase.
   
  0.668
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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