STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CCDC134Coiled-coil domain-containing protein 134-like isoform X2. (227 aa)    
Predicted Functional Partners:
cbr1
Carbonyl reductase [NADPH] 1; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 
 0.736
APBA3
Amyloid beta A4 precursor protein-binding family A member 3-like.
      
 0.511
apba1-2
Amyloid beta (A4) precursor protein-binding, family A, member 1 (X11).
      
 0.511
LOC106577071
Uncharacterized protein LOC106577071.
      
 0.476
ENSSSAP00000080471
annotation not available
      
 0.468
haus8
HAUS augmin-like complex subunit 8 isoform X2.
      
 0.465
ccdc34
Coiled-coil domain-containing protein 34 isoform X1.
    
 
 0.447
ENSSSAP00000034692
annotation not available
      
 0.418
ENSSSAP00000083538
annotation not available
      
 0.418
LOC106569843
BOLA class I histocompatibility antigen, alpha chain BL3-7-like; Belongs to the MHC class I family.
      
 0.418
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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