Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106569632Apolipoprotein A-I-like. (255 aa)    
Predicted Functional Partners:
LOC106612462
Uncharacterized protein LOC106612462.
     
  0.915
LOC106570128
Apolipoprotein Eb-like.
  
 
 
0.906
LOC106577216
GTP-binding protein SAR1b-like; Belongs to the small GTPase superfamily. SAR1 family.
    
 0.745
LOC106608453
GTP-binding protein SAR1a-like; Belongs to the small GTPase superfamily. SAR1 family.
    
 0.745
LOC106587782
Carnitine O-palmitoyltransferase 1, liver isoform-like isoform X1; Belongs to the carnitine/choline acetyltransferase family.
      
 0.714
LOC106605686
Apolipoprotein C-II-like.
     
 0.702
LOC106577525
Apolipoprotein C-II-like.
     
 0.702
LOC106611125
Apolipoprotein B-100-like.
   
 0.639
LOC100136579
Apolipoprotein B-100 isoform X1.
   
 0.639
LOC106605689
Apolipoprotein Eb-like.
  
 
 
0.595
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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