STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
VPS54Vacuolar protein sorting-associated protein 54-like isoform X1. (1003 aa)    
Predicted Functional Partners:
VPS53
Vacuolar protein sorting-associated protein 53 homolog isoform X1.
   
 0.993
vps52
Vacuolar protein sorting-associated protein 52 homolog.
    
 0.989
vps51
Vacuolar protein sorting-associated protein 51 homolog isoform X1.
    
 0.988
ENSSSAP00000063608
VPS53 subunit of GARP complex.
   
 0.985
LOC100286442
Vacuolar protein sorting-associated protein 52 homolog isoform X4.
    
 0.977
LOC106603134
Vacuolar protein sorting-associated protein 51 homolog isoform X1.
    
 0.976
tssc1
Protein TSSC1 isoform X2.
    
 
 0.942
ENSSSAP00000091433
EARP complex and GARP complex interacting protein 1.
    
 
 0.942
stx16
Syntaxin-16 isoform X2; Belongs to the syntaxin family.
    
 0.941
LOC106565427
Syntaxin-16-like isoform X2; Belongs to the syntaxin family.
    
 0.941
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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