STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RNZ2Zinc phosphodiesterase ELAC protein 2. (903 aa)    
Predicted Functional Partners:
LOC106575027
Mitochondrial ribonuclease P protein 1-like isoform X2.
   
 
 0.910
ENSSSAP00000012787
tRNA methyltransferase 10C, mitochondrial RNase P subunit.
   
 
 0.910
HCD2
3-hydroxyacyl-CoA dehydrogenase type-2; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
 
 0.853
endog
Endonuclease.
   
 
 0.836
exog
Nuclease EXOG, mitochondrial.
   
 
 0.836
rnf123
E3 ubiquitin-protein ligase RNF123.
    
   0.819
utp20
Small subunit processome component 20 homolog.
   
  
 0.818
LOC106589826
ATP-dependent RNA helicase SUPV3L1, mitochondrial-like isoform X1.
   
  
 0.774
LOC106612443
ATP-dependent RNA helicase SUPV3L1, mitochondrial-like isoform X1.
   
  
 0.774
trap1
Heat shock protein 75 kDa, mitochondrial.
   
   0.767
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.