LOC106603053 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC106603053

V-type proton ATPase catalytic subunit A-like. (618 aa)

Predicted Functional Partners:

LOC106608215

0.991

LOC106571673

0.991

LOC106561370

0.988

LOC106576269

0.988

LOC106609141

0.988

atp6v1f

0.988

LOC100136392

0.984

LOC106563054

0.984

vatb2

0.984

vato

0.982

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC100136392	LOC106561370	ENSSSAP00000004057	ENSSSAP00000020982	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	V-type proton ATPase subunit E 1-like.	0.997
LOC100136392	LOC106571673	ENSSSAP00000004057	ENSSSAP00000082298	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	V-type proton ATPase subunit D.	0.997
LOC100136392	LOC106576269	ENSSSAP00000004057	ENSSSAP00000045763	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	V-type proton ATPase subunit E 1-like.	0.997
LOC100136392	LOC106603053	ENSSSAP00000004057	ENSSSAP00000001240	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	V-type proton ATPase catalytic subunit A-like.	0.984
LOC100136392	LOC106608215	ENSSSAP00000004057	ENSSSAP00000038393	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	ATPase H+ transporting V1 subunit D.	0.997
LOC100136392	LOC106609141	ENSSSAP00000004057	ENSSSAP00000062092	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.995
LOC100136392	atp6v1f	ENSSSAP00000004057	ENSSSAP00000089523	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.995
LOC100136392	vato	ENSSSAP00000004057	ENSSSAP00000054780	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	Vacuolar ATP synthase 21 kDa proteolipid subunit; Belongs to the V-ATPase proteolipid subunit family.	0.993
LOC106561370	LOC100136392	ENSSSAP00000020982	ENSSSAP00000004057	V-type proton ATPase subunit E 1-like.	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	0.997
LOC106561370	LOC106563054	ENSSSAP00000020982	ENSSSAP00000102981	V-type proton ATPase subunit E 1-like.	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	0.995
LOC106561370	LOC106571673	ENSSSAP00000020982	ENSSSAP00000082298	V-type proton ATPase subunit E 1-like.	V-type proton ATPase subunit D.	0.996
LOC106561370	LOC106603053	ENSSSAP00000020982	ENSSSAP00000001240	V-type proton ATPase subunit E 1-like.	V-type proton ATPase catalytic subunit A-like.	0.988
LOC106561370	LOC106608215	ENSSSAP00000020982	ENSSSAP00000038393	V-type proton ATPase subunit E 1-like.	ATPase H+ transporting V1 subunit D.	0.996
LOC106561370	LOC106609141	ENSSSAP00000020982	ENSSSAP00000062092	V-type proton ATPase subunit E 1-like.	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.997
LOC106561370	atp6v1f	ENSSSAP00000020982	ENSSSAP00000089523	V-type proton ATPase subunit E 1-like.	V-type proton ATPase subunit F; Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.997
LOC106561370	vatb2	ENSSSAP00000020982	ENSSSAP00000104753	V-type proton ATPase subunit E 1-like.	Salmo salar Vacuolar ATP synthase subunit B, brain isoform (vatb2), mRNA.	0.995
LOC106561370	vato	ENSSSAP00000020982	ENSSSAP00000054780	V-type proton ATPase subunit E 1-like.	Vacuolar ATP synthase 21 kDa proteolipid subunit; Belongs to the V-ATPase proteolipid subunit family.	0.992
LOC106563054	LOC106561370	ENSSSAP00000102981	ENSSSAP00000020982	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	V-type proton ATPase subunit E 1-like.	0.995
LOC106563054	LOC106571673	ENSSSAP00000102981	ENSSSAP00000082298	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	V-type proton ATPase subunit D.	0.996
LOC106563054	LOC106576269	ENSSSAP00000102981	ENSSSAP00000045763	Vacuolar proton pump subunit B; Non-catalytic subunit of the peripheral V1 complex of vacuolar ATPase; Belongs to the ATPase alpha/beta chains family.	V-type proton ATPase subunit E 1-like.	0.995