LOC106590237 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106590237

Uncharacterized protein LOC106590237 isoform X1. (715 aa)

Predicted Functional Partners:

tbp

0.598

LOC106602273

0.598

LOC106611245

0.598

LOC106589653

0.598

henmt1

0.589

LOC106606488

0.564

LOC106588897

0.562

LOC106588921

0.562

chrc1

0.562

nfyc

0.562

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106588897	LOC106590237	ENSSSAP00000045023	ENSSSAP00000001258	Nuclear transcription factor Y subunit gamma-like isoform X2.	Uncharacterized protein LOC106590237 isoform X1.	0.562
LOC106588921	LOC106590237	ENSSSAP00000047316	ENSSSAP00000001258	Chromatin accessibility complex protein 1-like.	Uncharacterized protein LOC106590237 isoform X1.	0.562
LOC106589653	LOC106590237	ENSSSAP00000094211	ENSSSAP00000001258	TATA-box-binding protein-like.	Uncharacterized protein LOC106590237 isoform X1.	0.598
LOC106589653	LOC106606488	ENSSSAP00000094211	ENSSSAP00000047340	TATA-box-binding protein-like.	LOW QUALITY PROTEIN: CREB-binding protein-like.	0.623
LOC106590237	LOC106588897	ENSSSAP00000001258	ENSSSAP00000045023	Uncharacterized protein LOC106590237 isoform X1.	Nuclear transcription factor Y subunit gamma-like isoform X2.	0.562
LOC106590237	LOC106588921	ENSSSAP00000001258	ENSSSAP00000047316	Uncharacterized protein LOC106590237 isoform X1.	Chromatin accessibility complex protein 1-like.	0.562
LOC106590237	LOC106589653	ENSSSAP00000001258	ENSSSAP00000094211	Uncharacterized protein LOC106590237 isoform X1.	TATA-box-binding protein-like.	0.598
LOC106590237	LOC106602273	ENSSSAP00000001258	ENSSSAP00000032003	Uncharacterized protein LOC106590237 isoform X1.	TATA box-binding protein-like protein 2.	0.598
LOC106590237	LOC106606488	ENSSSAP00000001258	ENSSSAP00000047340	Uncharacterized protein LOC106590237 isoform X1.	LOW QUALITY PROTEIN: CREB-binding protein-like.	0.564
LOC106590237	LOC106611245	ENSSSAP00000001258	ENSSSAP00000092169	Uncharacterized protein LOC106590237 isoform X1.	TATA-box-binding protein 2-like.	0.598
LOC106590237	chrc1	ENSSSAP00000001258	ENSSSAP00000064006	Uncharacterized protein LOC106590237 isoform X1.	Chromatin accessibility complex protein 1.	0.562
LOC106590237	henmt1	ENSSSAP00000001258	ENSSSAP00000050640	Uncharacterized protein LOC106590237 isoform X1.	Small RNA 2'-O-methyltransferase.	0.589
LOC106590237	nfyc	ENSSSAP00000001258	ENSSSAP00000064902	Uncharacterized protein LOC106590237 isoform X1.	Nuclear transcription factor Y subunit gamma isoform X1.	0.562
LOC106590237	tbp	ENSSSAP00000001258	ENSSSAP00000014212	Uncharacterized protein LOC106590237 isoform X1.	TATA-box-binding protein isoform X1.	0.598
LOC106602273	LOC106590237	ENSSSAP00000032003	ENSSSAP00000001258	TATA box-binding protein-like protein 2.	Uncharacterized protein LOC106590237 isoform X1.	0.598
LOC106602273	LOC106606488	ENSSSAP00000032003	ENSSSAP00000047340	TATA box-binding protein-like protein 2.	LOW QUALITY PROTEIN: CREB-binding protein-like.	0.623
LOC106606488	LOC106589653	ENSSSAP00000047340	ENSSSAP00000094211	LOW QUALITY PROTEIN: CREB-binding protein-like.	TATA-box-binding protein-like.	0.623
LOC106606488	LOC106590237	ENSSSAP00000047340	ENSSSAP00000001258	LOW QUALITY PROTEIN: CREB-binding protein-like.	Uncharacterized protein LOC106590237 isoform X1.	0.564
LOC106606488	LOC106602273	ENSSSAP00000047340	ENSSSAP00000032003	LOW QUALITY PROTEIN: CREB-binding protein-like.	TATA box-binding protein-like protein 2.	0.623
LOC106606488	LOC106611245	ENSSSAP00000047340	ENSSSAP00000092169	LOW QUALITY PROTEIN: CREB-binding protein-like.	TATA-box-binding protein 2-like.	0.623