STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chch8Coiled-coil-helix-coiled-coil-helix domain-containing protein 8 isoform X1. (84 aa)    
Predicted Functional Partners:
LOC106562297
COX assembly mitochondrial protein.
   
 
 0.673
ENSSSAP00000053660
C-x(9)-C motif containing 2.
   
 
 0.673
LOC106589330
Cytochrome C oxidase assembly protein COX19.
   
 
 0.627
ENSSSAP00000043843
annotation not available
    
 0.624
LOC106586601
Cytochrome C oxidase Copper Chaperone.
    
 0.624
lyrm7
Complex III assembly factor LYRM7; Belongs to the complex I LYR family.
      
 0.601
LOC106606249
Succinate dehydrogenase assembly factor 4, mitochondrial-like.
      
 0.593
LOC106576700
Succinate dehydrogenase assembly factor 4, mitochondrial-like.
      
 0.593
msh6
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
    
 
 0.562
LOC106609214
Cytochrome c oxidase assembly factor 6 homolog.
   
 
 0.559
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.