STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC100196681Far upstream element-binding protein 3 isoform X2. (543 aa)    
Predicted Functional Partners:
LOC106568618
poly(U)-binding-splicing factor PUF60-like.
   
 
 0.639
ENSSSAP00000065525
annotation not available
   
 
 0.639
LOC106590178
poly(U)-binding-splicing factor PUF60-like isoform X4.
   
 
 0.639
PUF60
poly(U)-binding-splicing factor PUF60-like isoform X3.
   
 
 0.639
LOC106593600
poly(A)-specific ribonuclease PARN-like.
   
 0.574
ENSSSAP00000010521
annotation not available
   
 0.574
dcp2
m7GpppN-mRNA hydrolase isoform X1.
     
 0.554
exosc5
Exosome complex component RRP46 isoform X1.
   
 
 0.539
exosc3
Exosome complex component RRP40.
   
 
 0.537
exos4
Exosome complex exonuclease RRP41.
   
 
 0.522
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.