Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC100196681Far upstream element-binding protein 3 isoform X2. (543 aa)    
Predicted Functional Partners:
sumf2
Sulfatase-modifying factor 2 isoform X1.
    
   0.763
LOC106610670
Parkin coregulated gene protein homolog.
   
 
 0.748
LOC106561796
Protein quaking-A isoform X1.
   
 
 0.748
LOC106605787
Protein quaking-B-like isoform X1.
   
 
 0.748
qki
Protein quaking isoform X1.
   
 
 0.748
LOC106578914
Protein quaking-A-like isoform X2.
   
 
 0.748
ENSSSAP00000115919
Protein quaking-A-like.
   
 
 0.748
LOC106568618
poly(U)-binding-splicing factor PUF60-like.
   
 
 0.736
ENSSSAP00000065525
annotation not available
   
 
 0.736
LOC106590178
poly(U)-binding-splicing factor PUF60-like isoform X4.
   
 
 0.736
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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