STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106603057Lipocalin-like; Belongs to the calycin superfamily. Lipocalin family. (195 aa)    
Predicted Functional Partners:
cdc73
Parafibromin.
   
 0.762
cdc73-2
Parafibromin isoform X1.
   
 0.762
LOC106581163
RNA polymerase II-associated factor 1 homolog isoform X2.
   
 0.709
paf1
RNA polymerase II-associated factor 1 homolog.
   
 0.709
cinp
Cyclin-dependent kinase 2-interacting protein.
    
 0.685
ENSSSAP00000077142
annotation not available
    
 0.685
LOC106562103
RNA polymerase-associated protein CTR9 homolog.
    
 0.685
ctr9
RNA polymerase-associated protein CTR9 homolog.
    
 0.685
LOC106573105
Aurora kinase B-like; Belongs to the protein kinase superfamily.
    
 
 0.615
stk6
Serine/threonine-protein kinase 6; Belongs to the protein kinase superfamily.
    
 
 0.615
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.