Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106592971Uromodulin-like. (836 aa)    
Predicted Functional Partners:
LOC106571903
Platelet glycoprotein IX-like.
    
 0.649
znf593
Zinc finger protein 593-like.
      
 0.606
LOC106575165
Integrin beta; Belongs to the integrin beta chain family.
    
  0.552
LOC106574237
Integrin beta; Belongs to the integrin beta chain family.
    
  0.552
LOC106582650
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
  0.538
LOC106565017
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
  0.538
CEL
Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family.
   
  0.503
CEL-2
Carboxylic ester hydrolase; Belongs to the type-B carboxylesterase/lipase family.
   
  0.503
LOC106612624
Numb-like protein isoform X1.
   
 0.472
LOC106580830
Numb-like protein isoform X2.
   
 0.472
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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