STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106590256Volume-regulated anion channel subunit LRRC8C-like isoform X1. (818 aa)    
Predicted Functional Partners:
LOC106592928
Protein tweety homolog; Probable chloride channel; Belongs to the tweety family.
      
 0.550
ENSSSAP00000024395
annotation not available
    
  0.527
ENSSSAP00000028539
annotation not available
    
  0.527
ENSSSAP00000086728
annotation not available
    
  0.527
ENSSSAP00000092802
annotation not available
    
  0.527
ENSSSAP00000103215
annotation not available
    
  0.527
LOC100136494
Decorin; May affect the rate of fibrils formation.
  
     0.520
LOC106609038
Keratocan-like.
  
     0.505
LOC106576462
Keratocan-like.
  
     0.504
LOC106583520
Prolargin-like.
  
     0.496
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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