hmgb1 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

hmgb1

High mobility group protein B1 isoform X1. (203 aa)

Predicted Functional Partners:

becn1

0.953

ENSSSAP00000084846

0.943

actr8

0.740

ENSSSAP00000040349

0.730

LOC106578255

0.708

LOC106608430

0.701

LOC106566696

0.646

actr5

0.646

INO80C

0.642

LOC106574865

0.642

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000040349	hmgb1	ENSSSAP00000040349	ENSSSAP00000001490	annotation not available	High mobility group protein B1 isoform X1.	0.730
ENSSSAP00000084846	LOC106608430	ENSSSAP00000084846	ENSSSAP00000007789	annotation not available	Toll-like receptor 2.	0.931
ENSSSAP00000084846	becn1	ENSSSAP00000084846	ENSSSAP00000106116	annotation not available	Beclin-1 isoform X1.	0.772
ENSSSAP00000084846	hmgb1	ENSSSAP00000084846	ENSSSAP00000001490	annotation not available	High mobility group protein B1 isoform X1.	0.943
INO80C	LOC106566696	ENSSSAP00000022149	ENSSSAP00000008502	INO80 complex subunit C.	Actin-related protein 5-like isoform X3.	0.985
INO80C	actr5	ENSSSAP00000022149	ENSSSAP00000109355	INO80 complex subunit C.	Actin-related protein 5; Belongs to the actin family.	0.985
INO80C	actr8	ENSSSAP00000022149	ENSSSAP00000029655	INO80 complex subunit C.	Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize (By similarity); Belongs to the actin family. ARP8 subfamily.	0.996
INO80C	hmgb1	ENSSSAP00000022149	ENSSSAP00000001490	INO80 complex subunit C.	High mobility group protein B1 isoform X1.	0.642
LOC106566696	INO80C	ENSSSAP00000008502	ENSSSAP00000022149	Actin-related protein 5-like isoform X3.	INO80 complex subunit C.	0.985
LOC106566696	LOC106574865	ENSSSAP00000008502	ENSSSAP00000049380	Actin-related protein 5-like isoform X3.	INO80 complex subunit C-like.	0.985
LOC106566696	actr8	ENSSSAP00000008502	ENSSSAP00000029655	Actin-related protein 5-like isoform X3.	Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize (By similarity); Belongs to the actin family. ARP8 subfamily.	0.996
LOC106566696	hmgb1	ENSSSAP00000008502	ENSSSAP00000001490	Actin-related protein 5-like isoform X3.	High mobility group protein B1 isoform X1.	0.646
LOC106574865	LOC106566696	ENSSSAP00000049380	ENSSSAP00000008502	INO80 complex subunit C-like.	Actin-related protein 5-like isoform X3.	0.985
LOC106574865	actr5	ENSSSAP00000049380	ENSSSAP00000109355	INO80 complex subunit C-like.	Actin-related protein 5; Belongs to the actin family.	0.985
LOC106574865	actr8	ENSSSAP00000049380	ENSSSAP00000029655	INO80 complex subunit C-like.	Actin-related protein 8; Plays an important role in the functional organization of mitotic chromosomes. Exhibits low basal ATPase activity, and unable to polymerize (By similarity); Belongs to the actin family. ARP8 subfamily.	0.996
LOC106574865	hmgb1	ENSSSAP00000049380	ENSSSAP00000001490	INO80 complex subunit C-like.	High mobility group protein B1 isoform X1.	0.642
LOC106578255	hmgb1	ENSSSAP00000043591	ENSSSAP00000001490	H1 histone family member 0 like protein.	High mobility group protein B1 isoform X1.	0.708
LOC106608430	ENSSSAP00000084846	ENSSSAP00000007789	ENSSSAP00000084846	Toll-like receptor 2.	annotation not available	0.931
LOC106608430	becn1	ENSSSAP00000007789	ENSSSAP00000106116	Toll-like receptor 2.	Beclin-1 isoform X1.	0.431
LOC106608430	hmgb1	ENSSSAP00000007789	ENSSSAP00000001490	Toll-like receptor 2.	High mobility group protein B1 isoform X1.	0.701