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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ct011C20orf11 homolog. (235 aa)    
Predicted Functional Partners:
ranbp9
Ran-binding protein 9 isoform X1.
   
 
 0.932
LOC106560827
Ran-binding protein 10-like.
   
 
 0.932
LOC106560827-2
Ran-binding protein 10-like isoform X2.
   
 
 0.932
LOC106595952
Armadillo repeat-containing protein 8-like.
    
 
 0.928
ENSSSAP00000052407
Armadillo repeat containing 8.
    
 
 0.928
armc8
Armadillo repeat-containing protein 8 isoform X1.
    
 
 0.928
LOC106612137
Protein RMD5 homolog B-like.
    
 
 0.915
ENSSSAP00000084422
annotation not available
    
 
 0.915
LOC106604261
Leucine zipper putative tumor suppressor 3-like.
    
 
 0.907
LOC106607896
WD repeat-containing protein 26-like isoform X2.
    
 
 0.894
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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