STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106601396E3 ubiquitin-protein ligase. (773 aa)    
Predicted Functional Partners:
LOC106561252
Mothers against decapentaplegic homolog.
    
 0.988
LOC106568470
Mothers against decapentaplegic homolog.
    
 0.988
LOC106563534
Mothers against decapentaplegic homolog.
    
 0.987
LOC106593023
Mothers against decapentaplegic homolog 6-like.
    
 0.987
smad6
Mothers against decapentaplegic homolog.
    
 0.987
LOC106569083
Protein patched homolog 1.
    
 0.973
LOC106580561
Protein patched homolog 1-like.
    
 0.973
PTCH1
Protein patched homolog 1 isoform X1.
    
 0.973
LOC106599390
Protein patched homolog 1-like.
    
 0.973
LOC106569209
Serine/threonine-protein kinase receptor; Belongs to the protein kinase superfamily. TKL Ser/Thr protein kinase family. TGFB receptor subfamily.
    
 0.966
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.