Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YTHDF1YTH domain-containing family protein 1-like isoform X2. (788 aa)    
Predicted Functional Partners:
YTHDC2
Uncharacterized protein LOC106609103 isoform X4.
   
 
 0.825
LOC106594281
RNA demethylase ALKBH5-like.
      
 0.822
ENSSSAP00000064907
alkB homolog 5, RNA demethylase.
      
 0.822
mettl14
N6-adenosine-methyltransferase subunit METTL14.
    
 
 0.797
PRRC2B
Protein PRRC2B-like isoform X4.
    
 
 0.783
PRRC2B-2
Protein PRRC2B-like isoform X6.
    
 
 0.783
LOC106610663
YTH domain-containing family protein 2-like.
   
 
 0.773
LOC106560907
YTH domain-containing family protein 2-like.
   
 
 0.773
LOC106579538
YTH domain-containing family protein 3-like isoform X1.
   
 
 0.773
LOC106590438
YTH domain-containing family protein 3-like.
   
 
 0.773
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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