STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
YTHDF1YTH domain-containing family protein 1-like isoform X2. (788 aa)    
Predicted Functional Partners:
LOC106573129
Zinc finger C3H1 domain-containing protein-like isoform X1.
    
 
 0.657
LOC106561542
Zinc finger C3H1 domain-containing protein-like isoform X1.
    
 
 0.657
mettl3
N6-adenosine-methyltransferase 70 kDa subunit; Belongs to the MT-A70-like family.
  
   
 0.651
LOC106603492
CCR4-NOT transcription complex subunit 7 isoform X2.
   
 
 0.607
cnot8
CCR4-NOT transcription complex subunit 8.
   
 
 0.607
LOC106564013
Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family.
   
  
 0.578
LOC100380651
Protein virilizer homolog.
    
 
 0.550
LOC100196682
Wilms tumor 1 associated protein-like isoform X1.
   
  
 0.519
wtap
pre-mRNA-splicing regulator WTAP isoform X1.
   
  
 0.519
ENSSSAP00000021711
annotation not available
      
 0.489
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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