LOC106600607 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106600607

Baculoviral IAP repeat-containing protein 7-like isoform X2. (454 aa)

Predicted Functional Partners:

LOC106562229

0.898

LOC106587422

0.898

LOC106562992

0.876

LOC106575188

0.868

tnr1a

0.868

LOC106573105

0.860

stk6

0.860

LOC106561604

0.860

LOC106603345

0.857

LOC106581203

0.857

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC106561604	LOC106562992	ENSSSAP00000072671	ENSSSAP00000031692	Aurora kinase B-like; Belongs to the protein kinase superfamily.	polyubiquitin-B.	0.724
LOC106561604	LOC106600607	ENSSSAP00000072671	ENSSSAP00000001582	Aurora kinase B-like; Belongs to the protein kinase superfamily.	Baculoviral IAP repeat-containing protein 7-like isoform X2.	0.860
LOC106561604	stk6	ENSSSAP00000072671	ENSSSAP00000026987	Aurora kinase B-like; Belongs to the protein kinase superfamily.	Serine/threonine-protein kinase 6; Belongs to the protein kinase superfamily.	0.431
LOC106562229	LOC106562992	ENSSSAP00000023914	ENSSSAP00000031692	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	polyubiquitin-B.	0.721
LOC106562229	LOC106575188	ENSSSAP00000023914	ENSSSAP00000051687	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	Tumor necrosis factor receptor superfamily member 1A-like.	0.998
LOC106562229	LOC106587422	ENSSSAP00000023914	ENSSSAP00000120048	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	Tumor necrosis factor receptor type 1-associated DEATH domain protein.	0.900
LOC106562229	LOC106600607	ENSSSAP00000023914	ENSSSAP00000001582	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	Baculoviral IAP repeat-containing protein 7-like isoform X2.	0.898
LOC106562229	tnr1a	ENSSSAP00000023914	ENSSSAP00000100357	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	Tumor necrosis factor receptor superfamily member 1A precursor.	0.998
LOC106562992	LOC106561604	ENSSSAP00000031692	ENSSSAP00000072671	polyubiquitin-B.	Aurora kinase B-like; Belongs to the protein kinase superfamily.	0.724
LOC106562992	LOC106562229	ENSSSAP00000031692	ENSSSAP00000023914	polyubiquitin-B.	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	0.721
LOC106562992	LOC106573105	ENSSSAP00000031692	ENSSSAP00000017954	polyubiquitin-B.	Aurora kinase B-like; Belongs to the protein kinase superfamily.	0.724
LOC106562992	LOC106575188	ENSSSAP00000031692	ENSSSAP00000051687	polyubiquitin-B.	Tumor necrosis factor receptor superfamily member 1A-like.	0.713
LOC106562992	LOC106587422	ENSSSAP00000031692	ENSSSAP00000120048	polyubiquitin-B.	Tumor necrosis factor receptor type 1-associated DEATH domain protein.	0.721
LOC106562992	LOC106600607	ENSSSAP00000031692	ENSSSAP00000001582	polyubiquitin-B.	Baculoviral IAP repeat-containing protein 7-like isoform X2.	0.876
LOC106562992	stk6	ENSSSAP00000031692	ENSSSAP00000026987	polyubiquitin-B.	Serine/threonine-protein kinase 6; Belongs to the protein kinase superfamily.	0.724
LOC106562992	tnr1a	ENSSSAP00000031692	ENSSSAP00000100357	polyubiquitin-B.	Tumor necrosis factor receptor superfamily member 1A precursor.	0.713
LOC106573105	LOC106562992	ENSSSAP00000017954	ENSSSAP00000031692	Aurora kinase B-like; Belongs to the protein kinase superfamily.	polyubiquitin-B.	0.724
LOC106573105	LOC106600607	ENSSSAP00000017954	ENSSSAP00000001582	Aurora kinase B-like; Belongs to the protein kinase superfamily.	Baculoviral IAP repeat-containing protein 7-like isoform X2.	0.860
LOC106573105	stk6	ENSSSAP00000017954	ENSSSAP00000026987	Aurora kinase B-like; Belongs to the protein kinase superfamily.	Serine/threonine-protein kinase 6; Belongs to the protein kinase superfamily.	0.431
LOC106575188	LOC106562229	ENSSSAP00000051687	ENSSSAP00000023914	Tumor necrosis factor receptor superfamily member 1A-like.	Tumor necrosis factor receptor type 1-associated DEATH domain protein-like.	0.998