STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106600544Uncharacterized protein LOC106600544 isoform X1. (584 aa)    
Predicted Functional Partners:
zgpat
Zinc finger CCCH-type with G patch domain-containing protein; Transcription repressor that specifically binds the 5'- GGAG[GA]A[GA]A-3' consensus sequence. Represses transcription by recruiting the chromatin multiprotein complex NuRD to target promoters. Negatively regulates expression of EGFR, a gene involved in cell proliferation, survival and migration (By similarity).
   
  
 0.677
acad8
isobutyryl-CoA dehydrogenase, mitochondrial.
      
 0.558
LOC106613017
isobutyryl-CoA dehydrogenase, mitochondrial-like.
      
 0.558
LOC106586734
Serine/arginine repetitive matrix protein 2-like.
  
   
 0.536
aff3
AF4/FMR2 family member 3.
  
   
 0.532
ddx11
Probable ATP-dependent RNA helicase DDX11 isoform X1.
      
 0.427
rfc3
Replication factor C subunit 3 isoform X1.
      
 0.424
rtn4
Reticulon.
  
     0.424
rtn10
Reticulon.
  
     0.423
LOC106573051
Coiled-coil domain-containing protein 136-like isoform X1.
  
     0.414
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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