OAT protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

OAT

Ornithine aminotransferase, mitochondrial-like; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (449 aa)

Predicted Functional Partners:

p5cs

0.990

LOC106579029

0.990

LOC106589322

0.990

nags

0.969

asl

0.968

arg2

0.966

argi1

0.966

ARG1

0.966

LOC106611485

0.966

otc

0.936

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARG1	LOC106579029	ENSSSAP00000052854	ENSSSAP00000093434	Arginase.	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	0.671
ARG1	LOC106589322	ENSSSAP00000052854	ENSSSAP00000108551	Arginase.	Delta-1-pyrroline-5-carboxylate synthase-like.	0.671
ARG1	LOC106611485	ENSSSAP00000052854	ENSSSAP00000075367	Arginase.	Arginase.	0.853
ARG1	OAT	ENSSSAP00000052854	ENSSSAP00000001622	Arginase.	Ornithine aminotransferase, mitochondrial-like; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.966
ARG1	arg2	ENSSSAP00000052854	ENSSSAP00000000121	Arginase.	Arginase 2.	0.853
ARG1	asl	ENSSSAP00000052854	ENSSSAP00000034220	Arginase.	Argininosuccinate lyase.	0.971
ARG1	nags	ENSSSAP00000052854	ENSSSAP00000013315	Arginase.	N-acetylglutamate synthase, mitochondrial.	0.649
ARG1	otc	ENSSSAP00000052854	ENSSSAP00000077383	Arginase.	Ornithine carbamoyltransferase, mitochondrial; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.966
ARG1	p5cs	ENSSSAP00000052854	ENSSSAP00000056471	Arginase.	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	0.671
LOC106579029	ARG1	ENSSSAP00000093434	ENSSSAP00000052854	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Arginase.	0.671
LOC106579029	LOC106589322	ENSSSAP00000093434	ENSSSAP00000108551	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Delta-1-pyrroline-5-carboxylate synthase-like.	0.996
LOC106579029	LOC106611485	ENSSSAP00000093434	ENSSSAP00000075367	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Arginase.	0.671
LOC106579029	OAT	ENSSSAP00000093434	ENSSSAP00000001622	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Ornithine aminotransferase, mitochondrial-like; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.	0.990
LOC106579029	arg2	ENSSSAP00000093434	ENSSSAP00000000121	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Arginase 2.	0.671
LOC106579029	argi1	ENSSSAP00000093434	ENSSSAP00000029501	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Arginase.	0.671
LOC106579029	asl	ENSSSAP00000093434	ENSSSAP00000034220	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Argininosuccinate lyase.	0.836
LOC106579029	nags	ENSSSAP00000093434	ENSSSAP00000013315	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	N-acetylglutamate synthase, mitochondrial.	0.826
LOC106579029	otc	ENSSSAP00000093434	ENSSSAP00000077383	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Ornithine carbamoyltransferase, mitochondrial; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.717
LOC106579029	p5cs	ENSSSAP00000093434	ENSSSAP00000056471	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	Delta-1-pyrroline-5-carboxylate synthase; In the C-terminal section; belongs to the gamma-glutamyl phosphate reductase family.	0.997
LOC106589322	ARG1	ENSSSAP00000108551	ENSSSAP00000052854	Delta-1-pyrroline-5-carboxylate synthase-like.	Arginase.	0.671