Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC106595434UPF0472 protein C16orf72 homolog. (283 aa)    
Predicted Functional Partners:
pole3
DNA-directed DNA polymerase epsilon 3.
    
 
 0.812
LOC100380641
E3 ubiquitin-protein ligase HUWE1 isoform X13.
    
 
 0.806
LOC106567026
E3 ubiquitin-protein ligase HUWE1-like isoform X16.
    
 
 0.806
mars
methionine--tRNA ligase, cytoplasmic; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
   0.767
yars1
Tyrosine--tRNA ligase.
    
   0.732
usp7
Ubiquitin carboxyl-terminal hydrolase 7.
   
 
 0.718
LOC106606244
Ubiquitin carboxyl-terminal hydrolase.
   
 
 0.718
LOC106591177
Ubiquitin carboxyl-terminal hydrolase 7-like.
   
 
 0.718
LOC106581777
D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
   0.713
LOC106579624
Importin-4-like isoform X2.
    
   0.713
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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