STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106604304Tyrosine-protein phosphatase non-receptor type 20-like. (354 aa)    
Predicted Functional Partners:
LOC106603825
Rap guanine nucleotide exchange factor 6-like isoform X6.
    
 0.732
LOC106580294
Pleckstrin homology domain-containing family A member 2-like.
    
 0.662
LOC106585005
Pleckstrin homology domain-containing family A member 2-like isoform X2.
    
 0.662
LOC106611555
Rap guanine nucleotide exchange factor 2-like isoform X5.
    
 
 0.620
rapgef2
Rap guanine nucleotide exchange factor 2 isoform X8.
    
 
 0.620
ENSSSAP00000071238
Rap guanine nucleotide exchange factor (GEF) 6.
    
 
 0.620
GAB1
GRB2-associated-binding protein 1 isoform X3.
    
 0.610
LOC106573931
Adenomatous polyposis coli protein 2-like.
   
 
 0.562
apc2
Adenomatous polyposis coli protein 2.
   
 
 0.562
apc
Adenomatous polyposis coli protein isoform X1.
   
 
 0.562
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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