Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
znf488Zinc finger protein 488. (518 aa)    
Predicted Functional Partners:
LOC106579536
Class E basic helix-loop-helix protein 22-like.
   
 
 0.630
bhlhe22
Class E basic helix-loop-helix protein 22.
   
 
 0.630
BHLHE22
Class E basic helix-loop-helix protein 22-like.
   
 
 0.630
LOC106590392
Class E basic helix-loop-helix protein 22-like.
   
 
 0.630
prdm6
Putative histone-lysine N-methyltransferase PRDM6 isoform X1.
      
 0.606
LOC106612677
Uncharacterized protein LOC106612677 isoform X1.
    
 0.600
PRDM15
PR domain zinc finger protein 15-like isoform X1.
    
 0.566
PRDM15-2
PR domain zinc finger protein 15-like.
    
 0.566
LOC106609225
PR domain zinc finger protein 4-like isoform X1.
    
 0.564
prdm16
PR domain zinc finger protein 16 isoform X14.
    
 0.564
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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