LOC106602921 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC106602921

A disintegrin and metalloproteinase with thrombospondin motifs 2-like. (1345 aa)

Predicted Functional Partners:

parp2

0.487

LOC106612440

0.483

B3GLT

0.483

LOC106586440

0.437

LOC106582296

0.437

ccbe1

0.430

LOC106600142

0.420

LOC106608858

0.409

LOC106577822

0.409

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B3GLT	LOC106582296	ENSSSAP00000088805	ENSSSAP00000066484	Beta-1,3-glucosyltransferase precursor.	GDP-fucose protein O-fucosyltransferase 2-like.	0.592
B3GLT	LOC106586440	ENSSSAP00000088805	ENSSSAP00000064148	Beta-1,3-glucosyltransferase precursor.	GDP-fucose protein O-fucosyltransferase 2-like isoform X1.	0.592
B3GLT	LOC106602921	ENSSSAP00000088805	ENSSSAP00000001765	Beta-1,3-glucosyltransferase precursor.	A disintegrin and metalloproteinase with thrombospondin motifs 2-like.	0.483
LOC106577822	LOC106602921	ENSSSAP00000044782	ENSSSAP00000001765	Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like.	A disintegrin and metalloproteinase with thrombospondin motifs 2-like.	0.409
LOC106582296	B3GLT	ENSSSAP00000066484	ENSSSAP00000088805	GDP-fucose protein O-fucosyltransferase 2-like.	Beta-1,3-glucosyltransferase precursor.	0.592
LOC106582296	LOC106586440	ENSSSAP00000066484	ENSSSAP00000064148	GDP-fucose protein O-fucosyltransferase 2-like.	GDP-fucose protein O-fucosyltransferase 2-like isoform X1.	0.900
LOC106582296	LOC106602921	ENSSSAP00000066484	ENSSSAP00000001765	GDP-fucose protein O-fucosyltransferase 2-like.	A disintegrin and metalloproteinase with thrombospondin motifs 2-like.	0.437
LOC106582296	LOC106612440	ENSSSAP00000066484	ENSSSAP00000034942	GDP-fucose protein O-fucosyltransferase 2-like.	Beta-1,3-glucosyltransferase-like isoform X3.	0.592
LOC106586440	B3GLT	ENSSSAP00000064148	ENSSSAP00000088805	GDP-fucose protein O-fucosyltransferase 2-like isoform X1.	Beta-1,3-glucosyltransferase precursor.	0.592
LOC106586440	LOC106582296	ENSSSAP00000064148	ENSSSAP00000066484	GDP-fucose protein O-fucosyltransferase 2-like isoform X1.	GDP-fucose protein O-fucosyltransferase 2-like.	0.900
LOC106586440	LOC106602921	ENSSSAP00000064148	ENSSSAP00000001765	GDP-fucose protein O-fucosyltransferase 2-like isoform X1.	A disintegrin and metalloproteinase with thrombospondin motifs 2-like.	0.437
LOC106586440	LOC106612440	ENSSSAP00000064148	ENSSSAP00000034942	GDP-fucose protein O-fucosyltransferase 2-like isoform X1.	Beta-1,3-glucosyltransferase-like isoform X3.	0.592
LOC106600142	LOC106602921	ENSSSAP00000051617	ENSSSAP00000001765	C-C motif chemokine 20-like.	A disintegrin and metalloproteinase with thrombospondin motifs 2-like.	0.420
LOC106602921	B3GLT	ENSSSAP00000001765	ENSSSAP00000088805	A disintegrin and metalloproteinase with thrombospondin motifs 2-like.	Beta-1,3-glucosyltransferase precursor.	0.483
LOC106602921	LOC106577822	ENSSSAP00000001765	ENSSSAP00000044782	A disintegrin and metalloproteinase with thrombospondin motifs 2-like.	Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like.	0.409
LOC106602921	LOC106582296	ENSSSAP00000001765	ENSSSAP00000066484	A disintegrin and metalloproteinase with thrombospondin motifs 2-like.	GDP-fucose protein O-fucosyltransferase 2-like.	0.437
LOC106602921	LOC106586440	ENSSSAP00000001765	ENSSSAP00000064148	A disintegrin and metalloproteinase with thrombospondin motifs 2-like.	GDP-fucose protein O-fucosyltransferase 2-like isoform X1.	0.437
LOC106602921	LOC106600142	ENSSSAP00000001765	ENSSSAP00000051617	A disintegrin and metalloproteinase with thrombospondin motifs 2-like.	C-C motif chemokine 20-like.	0.420
LOC106602921	LOC106608858	ENSSSAP00000001765	ENSSSAP00000022647	A disintegrin and metalloproteinase with thrombospondin motifs 2-like.	Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like isoform X1.	0.409
LOC106602921	LOC106612440	ENSSSAP00000001765	ENSSSAP00000034942	A disintegrin and metalloproteinase with thrombospondin motifs 2-like.	Beta-1,3-glucosyltransferase-like isoform X3.	0.483