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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106604325Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family. (399 aa)    
Predicted Functional Partners:
LOC106611327
Vacuolar protein 8-like isoform X1.
    
 
 0.665
ska2
Spindle and kinetochore-associated protein 2; Component of the SKA1 complex, a microtubule-binding subcomplex of the outer kinetochore that is essential for proper chromosome segregation. Required for timely anaphase onset during mitosis, when chromosomes undergo bipolar attachment on spindle microtubules leading to silencing of the spindle checkpoint. The SKA1 complex is a direct component of the kinetochore-microtubule interface and directly associates with microtubules as oligomeric assemblies. The complex facilitates the processive movement of microspheres along a microtubule in a [...]
   
 
 0.607
ska2-2
Spindle and kinetochore associated complex subunit 2.
   
 
 0.607
LOC106575916
DNA annealing helicase and endonuclease ZRANB3-like isoform X1.
    
 
 0.606
SMARCAL1
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1.
    
 
 0.606
ska1
Spindle and kinetochore-associated protein 1.
   
 
 0.603
ENSSSAP00000043956
annotation not available
   
 
 0.603
ENSSSAP00000022628
annotation not available
   
 
 0.585
LOC106609562
Cytoskeleton-associated protein 4-like.
   
 
 0.585
timeless
Protein timeless homolog.
   
 
 0.576
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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