STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106609157Choline O-acetyltransferase-like; Belongs to the carnitine/choline acetyltransferase family. (645 aa)    
Predicted Functional Partners:
LOC106608056
Glycerophosphocholine phosphodiesterase GPCPD1-like isoform X1.
   
 
 0.926
LOC106571744
Glycerophosphocholine phosphodiesterase GPCPD1-like isoform X1.
   
 
 0.926
rpp14
Ribonuclease P protein subunit p14 isoform X1.
   
 0.908
phop1
Probable phosphatase phospho1.
     
 0.905
LOC106607258
Probable phosphatase phospho1 isoform X1.
     
 0.905
LOC106573758
Choline kinase alpha-like.
   
 
 0.904
chkb
Choline/ethanolamine kinase.
   
 
 0.903
PHOSPHO1
Probable phosphatase phospho1 isoform X1.
     
 0.903
LOC106589926
Choline O-acetyltransferase-like; Belongs to the carnitine/choline acetyltransferase family.
  
  
 
0.900
scp2
Non-specific lipid-transfer protein isoform X1; Belongs to the thiolase-like superfamily. Thiolase family.
   
 0.862
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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