STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106612941Uncharacterized protein LOC106612941. (1533 aa)    
Predicted Functional Partners:
simc1
SUMO-interacting motif-containing protein 1.
    
   0.935
catsperb
Cation channel sperm-associated protein subunit beta isoform X1.
      
 0.594
ccdc60
Coiled-coil domain-containing protein 60 isoform X1.
      
 0.511
cenpf
Centromere protein F.
  
     0.437
rbks
Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway.
      
 0.414
ENSSSAP00000101386
annotation not available
      
 0.414
LOC106566023
Myosin-binding protein H-like isoform X2.
      
 0.403
LOC100194559
Myosin binding protein H-like.
      
 0.403
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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