STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PRPF6pre-mRNA processing factor 6. (598 aa)    
Predicted Functional Partners:
mfap1
Microfibrillar-associated protein 1.
   
 0.994
prpf4
U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1.
   
 0.993
zmat2
Zinc finger matrin-type protein 2.
   
 0.992
LOC106571944
Probable ATP-dependent RNA helicase DDX23.
   
 0.991
ENSSSAP00000077560
DEAD (Asp-Glu-Ala-Asp) box polypeptide 23.
   
 0.991
LOC106600990
116 kDa U5 small nuclear ribonucleoprotein component.
   
 0.990
LOC106579886
U5 small nuclear ribonucleoprotein 200 kDa helicase-like.
   
 0.990
LOC106607257
116 kDa U5 small nuclear ribonucleoprotein component.
   
 0.990
LOC106585548
U5 small nuclear ribonucleoprotein 200 kDa helicase.
   
 0.990
LOC100380699
pre-mRNA-processing-splicing factor 8.
   
 0.989
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.