Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
aar2C20orf4 homolog. (386 aa)    
Predicted Functional Partners:
znhit2
Zinc finger HIT domain-containing protein 2.
   
 
 0.992
LOC106600990
116 kDa U5 small nuclear ribonucleoprotein component.
    
 
 0.972
LOC106607257
116 kDa U5 small nuclear ribonucleoprotein component.
    
 
 0.972
LOC106579886
U5 small nuclear ribonucleoprotein 200 kDa helicase-like.
    
 
 0.964
LOC106585548
U5 small nuclear ribonucleoprotein 200 kDa helicase.
    
 
 0.964
LOC100380699
pre-mRNA-processing-splicing factor 8.
    
 
 0.961
LOC106612861
pre-mRNA-processing-splicing factor 8-like.
    
 
 0.961
LOC106563531
Protein TSSC4-like.
    
 
 0.957
ENSSSAP00000068557
Protein TSSC4-like.
    
 
 0.957
LOC106571944
Probable ATP-dependent RNA helicase DDX23.
    
 
 0.953
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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