STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
got1Aspartate aminotransferase. (411 aa)    
Predicted Functional Partners:
hpd
4-hydroxyphenylpyruvate dioxygenase.
  
 
 0.974
LOC106585509
4-hydroxyphenylpyruvate dioxygenase.
  
 
 0.973
LOC106570297
Asparagine synthetase [glutamine-hydrolyzing]-like.
   
 
 0.962
LOC106582961
Delta-1-pyrroline-5-carboxylate dehydrogenase; Belongs to the aldehyde dehydrogenase family.
   
 0.952
cgl
Cystathionine gamma-lyase.
   
 
 0.949
surf6
Kynurenine--oxoglutarate transaminase 1-like isoform X1.
   
 0.945
kat3
Kynurenine--oxoglutarate transaminase 3 isoform X1.
   
 0.945
ass1
Argininosuccinate synthase.
   
 
 0.944
LOC106609447
Tyrosine 3-monooxygenase-like.
  
 
 0.938
LOC106609449
Phenylalanine-4-hydroxylase-like.
  
 
 0.938
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.