STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccdc47Coiled-coil domain-containing protein 47. (460 aa)    
Predicted Functional Partners:
tmco1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
    
 
 0.984
LOC106613668
Nicalin-1-like isoform X1.
    
 
 0.960
LOC106573831
Nicalin-1 isoform X1.
    
 
 0.960
tm147
Transmembrane protein 147.
    
 
 0.955
LOC106605633
Transmembrane protein 147.
    
 
 0.955
LOC106565507
Nicalin; May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning.
    
 
 0.953
ENSSSAP00000007491
Ribosomal protein L38.
    
 
 0.920
rpl38
60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.
    
 
 0.920
rpl18
60S ribosomal protein L18.
   
   0.915
RL35A
60S ribosomal protein L35a.
   
   0.915
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.