Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ccdc47Coiled-coil domain-containing protein 47. (460 aa)    
Predicted Functional Partners:
tmco1
Calcium load-activated calcium channel; Calcium-selective channel required to prevent calcium stores from overfilling.
    
 
 0.975
tm147
Transmembrane protein 147.
   
 
 0.940
LOC106605633
Transmembrane protein 147.
   
 
 0.940
LOC106613668
Nicalin-1-like isoform X1.
    
 
 0.938
LOC106573831
Nicalin-1 isoform X1.
    
 
 0.938
LOC106564445
UPF0139 membrane protein C19orf56 homolog.
    
 
 0.928
ENSSSAP00000009460
WD repeat domain 83 opposite strand.
    
 
 0.928
LOC106593828
Translocation protein SEC63 homolog isoform X2.
   
 
 0.903
SEC61A1
SEC61 translocon alpha 1 subunit.
   
 
 0.903
LOC106583199
Protein transport protein Sec61 subunit alpha isoform B-like.
   
 
 0.903
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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