Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106563985Transcription factor RFX3-like isoform X2. (781 aa)    
Predicted Functional Partners:
LOC106585648
Serine/threonine-protein kinase Chk2-like isoform X2.
   
 0.788
LOC106580118
Serine/threonine-protein kinase Chk2-like isoform X1.
   
 0.788
LOC106601528
Forkhead box protein J1-A-like.
    
 
 0.770
LOC106606962
Forkhead box protein J1-A-like.
    
 
 0.770
LOC106609599
Forkhead box protein J1-B-like.
    
 
 0.770
LOC106589554
Forkhead box protein J1-B-like.
    
 
 0.770
atr
Serine/threonine-protein kinase ATR; Belongs to the PI3/PI4-kinase family.
    
 
 0.732
ENSSSAP00000103411
annotation not available
    
 
 0.732
RFXAP
Regulatory factor X-associated protein-like.
    
 0.702
rfxap
Regulatory factor X-associated protein.
    
 0.702
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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