Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106590115Low-density lipoprotein receptor-like isoform X1. (875 aa)    
Predicted Functional Partners:
LOC106579967
Low density lipoprotein receptor adapter protein 1-B-like isoform X1.
    
 0.923
arhb
Low density lipoprotein receptor adapter protein 1-B isoform X1.
    
 0.923
LOC106611125
Apolipoprotein B-100-like.
    
 0.873
LOC106577654
Uncharacterized protein LOC106577654.
    
  0.873
LOC100136579
Apolipoprotein B-100 isoform X1.
    
 0.873
dab2
Disabled homolog 2 isoform X1.
    
 0.863
dab2-2
Disabled homolog 2 isoform X1.
    
 0.863
RELN
Reelin-like.
    
 0.855
LOC106570696
Low density lipoprotein receptor adapter protein 1-A-like isoform X1.
    
  0.855
ENSSSAP00000049421
Reelin-like.
    
 0.855
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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