Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSSSAP00000001970annotation not available (587 aa)    
Predicted Functional Partners:
LOC106580094
Heterogeneous nuclear ribonucleoprotein K-like isoform X1.
   
 0.881
LOC106562047
Heterogeneous nuclear ribonucleoprotein K-like isoform X2.
   
 0.881
hnrnpk
Heterogeneous nuclear ribonucleoprotein K isoform X1.
   
 0.881
LOC106568347
Heterogeneous nuclear ribonucleoprotein K-like isoform X4.
   
 0.881
ncbp2
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing, translation regulation, nonsense- mediated mRNA decay, RNA-mediated gene silencing (RNAi) by microRNAs (miRNAs) and mRNA export. The CBC complex is involved in mRNA export from the nucleus, leading to the recruitment of the mRNA export machinery to the 5' end of mRNA and to mRNA export in a 5' to 3' direction through the nuclear pore. The CBC complex is also involved in mediating U [...]
    
 0.860
LOC106569367
Heterogeneous nuclear ribonucleoprotein C-like isoform X1.
   
 0.843
LOC106577997
Heterogeneous nuclear ribonucleoprotein C-like isoform X1.
   
 0.843
LOC106600345
Heterogeneous nuclear ribonucleoprotein C-like isoform X1.
   
 0.843
ENSSSAP00000095420
annotation not available
   
 0.843
LOC106611724
RNA-binding motif protein, X chromosome-like isoform X1.
   
 0.778
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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