LOC106590640 protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC106590640

Syntaxin-10-like. (266 aa)

Predicted Functional Partners:

ENSSSAP00000075387

0.983

vamp4

0.976

LOC106613970

0.976

LOC106579024

0.975

LOC106589328

0.975

stx16

0.972

LOC106565427

0.972

vamp3

0.968

LOC106585118

0.939

COG6

0.925

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
COG6	ENSSSAP00000075387	ENSSSAP00000070496	ENSSSAP00000075387	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Vesicle transport through interaction with t-SNAREs 1B.	0.900
COG6	LOC106565427	ENSSSAP00000070496	ENSSSAP00000059334	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Syntaxin-16-like isoform X2; Belongs to the syntaxin family.	0.976
COG6	LOC106579024	ENSSSAP00000070496	ENSSSAP00000078952	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Vesicle transport through interaction with t-SNAREs homolog 1A-like isoform X1.	0.956
COG6	LOC106589328	ENSSSAP00000070496	ENSSSAP00000112455	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Vesicle transport through interaction with t-SNAREs homolog 1A-like isoform X4.	0.956
COG6	LOC106590640	ENSSSAP00000070496	ENSSSAP00000001987	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Syntaxin-10-like.	0.925
COG6	LOC106613970	ENSSSAP00000070496	ENSSSAP00000058120	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Vesicle-associated membrane protein 4-like isoform X1.	0.844
COG6	stx16	ENSSSAP00000070496	ENSSSAP00000052653	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Syntaxin-16 isoform X2; Belongs to the syntaxin family.	0.976
COG6	vamp4	ENSSSAP00000070496	ENSSSAP00000056913	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	Vesicle-associated membrane protein 4 isoform X1.	0.844
ENSSSAP00000075387	COG6	ENSSSAP00000075387	ENSSSAP00000070496	Vesicle transport through interaction with t-SNAREs 1B.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.900
ENSSSAP00000075387	LOC106565427	ENSSSAP00000075387	ENSSSAP00000059334	Vesicle transport through interaction with t-SNAREs 1B.	Syntaxin-16-like isoform X2; Belongs to the syntaxin family.	0.992
ENSSSAP00000075387	LOC106579024	ENSSSAP00000075387	ENSSSAP00000078952	Vesicle transport through interaction with t-SNAREs 1B.	Vesicle transport through interaction with t-SNAREs homolog 1A-like isoform X1.	0.995
ENSSSAP00000075387	LOC106585118	ENSSSAP00000075387	ENSSSAP00000116311	Vesicle transport through interaction with t-SNAREs 1B.	Vesicle-associated membrane protein 8-like isoform X1.	0.978
ENSSSAP00000075387	LOC106589328	ENSSSAP00000075387	ENSSSAP00000112455	Vesicle transport through interaction with t-SNAREs 1B.	Vesicle transport through interaction with t-SNAREs homolog 1A-like isoform X4.	0.995
ENSSSAP00000075387	LOC106590640	ENSSSAP00000075387	ENSSSAP00000001987	Vesicle transport through interaction with t-SNAREs 1B.	Syntaxin-10-like.	0.983
ENSSSAP00000075387	LOC106613970	ENSSSAP00000075387	ENSSSAP00000058120	Vesicle transport through interaction with t-SNAREs 1B.	Vesicle-associated membrane protein 4-like isoform X1.	0.996
ENSSSAP00000075387	stx16	ENSSSAP00000075387	ENSSSAP00000052653	Vesicle transport through interaction with t-SNAREs 1B.	Syntaxin-16 isoform X2; Belongs to the syntaxin family.	0.992
ENSSSAP00000075387	vamp3	ENSSSAP00000075387	ENSSSAP00000109554	Vesicle transport through interaction with t-SNAREs 1B.	Vesicle-associated membrane protein 3.	0.964
ENSSSAP00000075387	vamp4	ENSSSAP00000075387	ENSSSAP00000056913	Vesicle transport through interaction with t-SNAREs 1B.	Vesicle-associated membrane protein 4 isoform X1.	0.996
LOC106565427	COG6	ENSSSAP00000059334	ENSSSAP00000070496	Syntaxin-16-like isoform X2; Belongs to the syntaxin family.	Conserved oligomeric Golgi complex subunit 6; Required for normal Golgi function.	0.976
LOC106565427	ENSSSAP00000075387	ENSSSAP00000059334	ENSSSAP00000075387	Syntaxin-16-like isoform X2; Belongs to the syntaxin family.	Vesicle transport through interaction with t-SNAREs 1B.	0.992