Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC106601610RING finger protein 113A-like. (337 aa)    
Predicted Functional Partners:
ENSSSAP00000097541
annotation not available
   
 0.962
cwc27
Peptidyl-prolyl cis-trans isomerase CWC27 homolog isoform X1.
   
 0.962
LOC106586461
pre-mRNA-splicing factor CWC22 homolog isoform X2.
    
 0.955
LOC106582271
pre-mRNA-splicing factor CWC22 homolog.
    
 0.955
ENSSSAP00000064904
DEAH (Asp-Glu-Ala-His) box polypeptide 16.
   
 0.951
LOC106582345
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 isoform X2.
   
 0.951
cdc40
pre-mRNA-processing factor 17.
    
 0.932
LOC106571808
pre-mRNA-processing factor 17-like.
    
 0.932
ik
RED protein.
    
  0.931
LOC106579886
U5 small nuclear ribonucleoprotein 200 kDa helicase-like.
   
 
 0.919
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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