STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106609990Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (147 aa)    
Predicted Functional Partners:
utp15
U3 small nucleolar RNA-associated protein 15 homolog.
   
 0.998
nop56
Nucleolar protein 5A.
   
 0.996
ENSSSAP00000077165
annotation not available
   
 0.996
nol5
Nucleolar protein 5.
   
 0.993
ENSSSAP00000057126
annotation not available
   
 0.993
LOC106578539
rRNA 2'-O-methyltransferase fibrillarin-like.
   
 0.990
fbrl
Salmo salar rRNA 2-O-methyltransferase fibrillarin (fbrl), mRNA.
   
 0.990
LOC106602804
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 0.989
LOC106609995
40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family.
  
 0.989
ENSSSAP00000070033
annotation not available
   
 0.985
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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