STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106601992Tetratricopeptide repeat protein 30A-like. (469 aa)    
Predicted Functional Partners:
ift52
Intraflagellar transport protein 52 homolog.
    
 0.996
cluap1
Clusterin-associated protein 1 isoform X2.
  
 0.994
ift80
LOW QUALITY PROTEIN: intraflagellar transport protein 80 homolog.
  
 
 0.994
ift57
Intraflagellar transport protein 57 homolog isoform X1.
   
 0.992
ift172
Intraflagellar transport protein 172 homolog.
   
 0.992
ift46
Intraflagellar transport protein 46 homolog isoform X1.
    
 0.990
ift88
Intraflagellar transport protein 88 homolog isoform X5.
    
 0.986
ENSSSAP00000069706
Intraflagellar transport 88 homolog.
    
 0.986
chdh
Choline dehydrogenase.
    
 0.985
LOC106585468
Intraflagellar transport protein 81 homolog.
    
 0.985
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.