STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106588849Coiled-coil domain-containing protein 85A-like. (561 aa)    
Predicted Functional Partners:
LOC106578530
Sorting nexin-16-like.
   
  
 0.437
bud13
BUD13 homolog.
      
 0.424
LOC106561903
Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
      
 0.408
LOC106561605
Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
      
 0.408
LOC106587063
Transporter; Belongs to the sodium:neurotransmitter symporter (SNF) (TC 2.A.22) family.
      
 0.408
znf622
Zinc finger protein 622 isoform X1.
      
 0.407
LOC106600788
Rho GTPase-activating protein 23-like isoform X2.
    
 
 0.406
LOC106579110
Rho GTPase-activating protein 23-like isoform X4.
    
 
 0.406
LOC106607247
Rho GTPase-activating protein 23-like isoform X9.
    
 
 0.406
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.