STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106601558Solute carrier family 25 member 39-like isoform X1; Belongs to the mitochondrial carrier (TC 2.A.29) family. (358 aa)    
Predicted Functional Partners:
abcb7
ATP-binding cassette sub-family B member 7, mitochondrial.
      
 0.589
uros
uroporphyrinogen-III synthase isoform X2.
      
 0.586
ENSSSAP00000065513
Uroporphyrinogen III synthase.
      
 0.586
ENSSSAP00000065805
Uroporphyrinogen III synthase.
      
 0.586
LOC106570962
Iron-sulfur cluster assembly 1 homolog, mitochondrial.
   
  
 0.584
dcup
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
      
 0.522
fech
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX.
   
  
 0.516
LOC106569255
Uroporphyrinogen decarboxylase; Belongs to the uroporphyrinogen decarboxylase family.
      
 0.513
sod2
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
      
 0.502
ENSSSAP00000000247
ATP-binding cassette, sub-family B (MDR/TAP), member 10.
      
 0.494
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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