STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GABT4-aminobutyrate aminotransferase, mitochondrial; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (320 aa)    
Predicted Functional Partners:
aasdh
acyl-CoA synthetase family member 4 isoform X1.
  
 
 0.864
SSDH
Succinate-semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
 0.823
adhfe1
Hydroxyacid-oxoacid transhydrogenase, mitochondrial isoform X1.
  
 
 0.813
nags
N-acetylglutamate synthase, mitochondrial.
     
 0.655
FH
Fumarate hydratase, mitochondrial-like.
   
 0.643
LOC106564811
Fumarate hydratase, mitochondrial-like isoform X1.
   
 0.643
LOC106567768
Uncharacterized protein LOC106567768 isoform X1.
   
 0.641
LOC106604578
Sphingosine-1-phosphate lyase 1-like isoform X1.
  
 0.633
LOC106576820
Sphingosine-1-phosphate lyase 1-like.
  
 0.633
l2hgdh
L-2-hydroxyglutarate dehydrogenase, mitochondrial.
  
  
 0.609
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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