STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106600637Protein shisa-3 homolog. (288 aa)    
Predicted Functional Partners:
cssa24h4orf22
Uncharacterized protein C4orf22 homolog.
      
 0.585
SYNDIG1
Synapse differentiation-inducing gene protein 1-like.
      
 0.536
LOC106569210
Vesicular, overexpressed in cancer, prosurvival protein 1-like isoform X1.
      
 0.499
LOC106590285
Vesicular, overexpressed in cancer, prosurvival protein 1-like isoform X1.
      
 0.499
LOC106579691
Vesicular, overexpressed in cancer, prosurvival protein 1-like isoform X1.
      
 0.499
LOC106588677
Endonuclease/exonuclease/phosphatase family domain-containing protein 1-like.
      
 0.495
EEPD1
Endonuclease/exonuclease/phosphatase family domain-containing protein 1-like.
      
 0.495
htatsf1
HIV Tat-specific factor 1.
      
 0.467
gsr
Zinc transporter 9.
      
 0.459
LOC106604543
Transmembrane protein 33-like.
      
 0.444
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.