STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC106563114Ran-binding protein 3-like isoform X1. (452 aa)    
Predicted Functional Partners:
NUP214
Nuclear pore complex protein Nup214-like isoform X2.
     
 0.608
ENSSSAP00000028410
annotation not available
   
 0.597
EGFLAM
Pikachurin-like isoform X1.
      
 0.596
katnal2
Katanin p60 ATPase-containing subunit A-like 2; Severs microtubules in vitro in an ATP-dependent manner. This activity may promote rapid reorganization of cellular microtubule arrays.
   
  
 0.585
LOC106591976
Nuclear pore complex protein Nup50-like.
     
 0.540
rae1
Salmo salar mRNA export factor (rae1l), mRNA.
   
 
  0.474
RAE1
mRNA export factor isoform X2.
   
 
  0.474
LOC106612158
NTF2-related export protein 2-like isoform X2.
     
 0.457
LOC106604300
NTF2-related export protein 2-like.
     
 0.457
NU107
Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC).
     
 0.429
Your Current Organism:
Salmo salar
NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar
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