timm10b protein (Salmo salar) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

timm10b

Mitochondrial import inner membrane translocase subunit Tim10 B. (215 aa)

Predicted Functional Partners:

timm10

0.998

ENSSSAP00000034099

0.998

timm9

0.990

ENSSSAP00000091774

0.990

LOC106603512

0.981

LOC106567977

0.981

LOC106561375

0.960

LOC106573186

0.960

ENSSSAP00000002022

0.953

ENSSSAP00000021155

0.953

Your Current Organism:

Salmo salar

NCBI taxonomy Id: 8030
Other names: Atlantic salmon, S. salar

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSSSAP00000002022	ENSSSAP00000034099	ENSSSAP00000002022	ENSSSAP00000034099	Translocase of inner mitochondrial membrane 29.	annotation not available	0.891
ENSSSAP00000002022	ENSSSAP00000091774	ENSSSAP00000002022	ENSSSAP00000091774	Translocase of inner mitochondrial membrane 29.	annotation not available	0.888
ENSSSAP00000002022	LOC106561375	ENSSSAP00000002022	ENSSSAP00000020325	Translocase of inner mitochondrial membrane 29.	Acylglycerol kinase, mitochondrial-like.	0.910
ENSSSAP00000002022	LOC106567977	ENSSSAP00000002022	ENSSSAP00000048208	Translocase of inner mitochondrial membrane 29.	Mitochondrial import inner membrane translocase subunit Tim22-like.	0.809
ENSSSAP00000002022	LOC106573186	ENSSSAP00000002022	ENSSSAP00000081067	Translocase of inner mitochondrial membrane 29.	Acylglycerol kinase, mitochondrial-like.	0.910
ENSSSAP00000002022	LOC106603512	ENSSSAP00000002022	ENSSSAP00000007955	Translocase of inner mitochondrial membrane 29.	Mitochondrial import inner membrane translocase subunit Tim22-like isoform X1.	0.809
ENSSSAP00000002022	timm10	ENSSSAP00000002022	ENSSSAP00000004523	Translocase of inner mitochondrial membrane 29.	Mitochondrial import inner membrane translocase subunit Tim10.	0.891
ENSSSAP00000002022	timm10b	ENSSSAP00000002022	ENSSSAP00000002516	Translocase of inner mitochondrial membrane 29.	Mitochondrial import inner membrane translocase subunit Tim10 B.	0.953
ENSSSAP00000002022	timm9	ENSSSAP00000002022	ENSSSAP00000030640	Translocase of inner mitochondrial membrane 29.	Mitochondrial import inner membrane translocase subunit Tim9.	0.888
ENSSSAP00000021155	ENSSSAP00000034099	ENSSSAP00000021155	ENSSSAP00000034099	annotation not available	annotation not available	0.891
ENSSSAP00000021155	ENSSSAP00000091774	ENSSSAP00000021155	ENSSSAP00000091774	annotation not available	annotation not available	0.888
ENSSSAP00000021155	LOC106561375	ENSSSAP00000021155	ENSSSAP00000020325	annotation not available	Acylglycerol kinase, mitochondrial-like.	0.910
ENSSSAP00000021155	LOC106567977	ENSSSAP00000021155	ENSSSAP00000048208	annotation not available	Mitochondrial import inner membrane translocase subunit Tim22-like.	0.809
ENSSSAP00000021155	LOC106573186	ENSSSAP00000021155	ENSSSAP00000081067	annotation not available	Acylglycerol kinase, mitochondrial-like.	0.910
ENSSSAP00000021155	LOC106603512	ENSSSAP00000021155	ENSSSAP00000007955	annotation not available	Mitochondrial import inner membrane translocase subunit Tim22-like isoform X1.	0.809
ENSSSAP00000021155	timm10	ENSSSAP00000021155	ENSSSAP00000004523	annotation not available	Mitochondrial import inner membrane translocase subunit Tim10.	0.891
ENSSSAP00000021155	timm10b	ENSSSAP00000021155	ENSSSAP00000002516	annotation not available	Mitochondrial import inner membrane translocase subunit Tim10 B.	0.953
ENSSSAP00000021155	timm9	ENSSSAP00000021155	ENSSSAP00000030640	annotation not available	Mitochondrial import inner membrane translocase subunit Tim9.	0.888
ENSSSAP00000034099	ENSSSAP00000002022	ENSSSAP00000034099	ENSSSAP00000002022	annotation not available	Translocase of inner mitochondrial membrane 29.	0.891
ENSSSAP00000034099	ENSSSAP00000021155	ENSSSAP00000034099	ENSSSAP00000021155	annotation not available	annotation not available	0.891